Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLTIGCDHGGRRLKDAIVKHLREKDIEVVDI--GTYTDESVDFPSYAEEVANQVVSGQSELGILCCGTGIGMSIAANKVDGIRAAVVSDTFSARATREHNNSNILCLGERVIGEGLALLLVDTWLEASFAG-DRHKRRLDKITELERK
3K8C Chain:B ((24-169))
-RVAIGTDHPAFAIHENLILYVKEAGDEFVPVYCGPKTAESVDYPDFASRVAEMVARKEVEFGVLACGSGIGMSIAANKVPGVRAALCHDHYTAAMSRIHNDANIVCVGERTTGVEVIREIIITFLQTPFSGEERHVRRIEKIRAIE--
General information:
TITO was launched using:
RESULT:
Template:
3K8C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96168 for 1207 contacts (-79.7/contact) +
2D Compatibility (PS) -15827 + (NN) -10387 + (LL) 372
1D Compatibility (HY) -12000 + (ID) 3050
Total energy: -137060.0 ( -113.55 by residue)
QMean score : 0.627
(partial model without unconserved sides chains):
PDB file :
Tito_3K8C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3K8C-query.scw
PDB file :
Tito_Scwrl_3K8C.pdb
: