Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRAAVLYE-NNVIKAEQIDEATCGKDQVRVEVKAVGICGSDIHKMQTRW--KYPLPAVMGHEFAGVITEIGSEVTNVAMGDRVAGIP--LEPCMECNYCKAGDFALCDNYRMVGSHFHGGFAENVVMKADNVISIGD-LDFEEGAMIEPLAVSMHGVLGIQ-PRLGDTVIVFGIGTIGILVVQCLLLAGVKDIIAVDISDKKLADAREFGCKYTINPKNED----LKERVFAYTNGLGADIALECAGSKITQEQCLLVTKKKGKVGFLGIAYADVLLHEEAFENIFRRELTLKGFWNSYSAPFPGEEWRTSIEFVKQGRIKLKPLISHRYKLEETKEAFDMILSREHDYNKVMILPQKGDD |
| 1RJW Chain:C ((1-339)) | MKAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVGDRV-GIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDGGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVG------GVHAAVVTAVSKPAFQSAYNSIRRGGACVLVG------LPPEEMPIPIF--DTVLNGIKIIGSIVGTRKDLQEALQFAAEGKVK---TIIEVQPLEKINEVFDRMLKGQINGRVVLTLEDK--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1RJW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -239292 for 2911 contacts (-82.2/contact) +
2D Compatibility (PS) -35219 + (NN) -5315 + (LL) 1096
1D Compatibility (HY) -16000 + (ID) 5600
Total energy: -300330.0 ( -103.17 by residue)
QMean score : 0.426
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