Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKLNEALKKAERIVFLTGAGVSVPSGIPDYRSKNGLYAGMSSPEYMLSHTCLVREPEKFYQFVTENMYYP-NAVPNVIHKKMAEIETEKDVT-IITQNIDGLHEKAGSKKVVNFHGSLYHCYCQNCGMT--VTAKDYLKSDIHTD-CGGVIRPDVVLYEEAISESAIDQSLTAIRKADLIVIVGTSFRVSPFCNLT-DYRNKKARIFAVNKERISL-PYPFEMMESDAVKVFEEI
1M2K Chain:A ((4-236))
--KLLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLW-NRYRPEELANPQAFAKDPEKVWKWYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHGSLRVVRCTSCNNSFEVESAPKIPPLPKCDKCGSLLRPGVVWAGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDEL
General information:
TITO was launched using:
RESULT:
Template:
1M2K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -138676 for 1874 contacts (-74.0/contact) +
2D Compatibility (PS) -24468 + (NN) -10145 + (LL) 272
1D Compatibility (HY) -13200 + (ID) 3800
Total energy: -190017.0 ( -101.40 by residue)
QMean score : 0.567
(partial model without unconserved sides chains):
PDB file :
Tito_1M2K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1M2K-query.scw
PDB file :
Tito_Scwrl_1M2K.pdb
: