Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VILIIDHNDSFTYNLYQYFLELQEEVQVVSATSFSLEAFQQLAPEMVVLSPGPGSPEDFPVSLALLGK--I-QVPILGICLGHQIIGHFFGAKVVPANVPVHGKTSVISHTGEGLFADLEPAFQVTRYHSLVIDPTTVPVNLKVTAVTEDGVIMGLVHATKPIHSVQFHPEAILSENGHAILKNFVRLGRNVK
2YWB Chain:A ((1-215))
MVLVLDFGSQYTRLIARRLRELRAFSLILPGDA-PLEEVLKHRPQALILSGGPRSVFDPDA-PRPDPRLFSSGLPLLGICYGMQLLAQELGGRVERA---EYGKA-LLTRHEGPLFRGLEGEVQVWMSHQDAVT--APPPGWRVVAETEENPVAAIASPDGRAYGVQFHPEVAHTPKGMQILENFLELAGV--
General information:
TITO was launched using:
RESULT:
Template:
2YWB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -149978 for 1567 contacts (-95.7/contact) +
2D Compatibility (PS) -19087 + (NN) -6184 + (LL) 216
1D Compatibility (HY) -6800 + (ID) 2500
Total energy: -184333.0 ( -117.63 by residue)
QMean score : 0.468
(partial model without unconserved sides chains):
PDB file :
Tito_2YWB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YWB-query.scw
PDB file :
Tito_Scwrl_2YWB.pdb
: