Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VGNSVMEKIKGGLVVSCQALEDEPLHSAFIMSKMALAAVQGGAVGIRANTAKDIRAIQSEIDVPIIGIYKKDYDDSDVFITPTLKEVREICETGVEIVAMDATTRKRPHNEDLKDILSAIRKEFPNTLFMADTASIEDVYYADSLGFDLIGTTLYGYTEETANKNISDDDFSHLKEVLKSTKRPVIAEGKIDSPSKARQVLTLGCYAVVVGGAVTRPQEITTRFTNEIQKIQEERGK
4UTT Chain:A ((10-227))
----MLDVVKGNLIVSCQALSDEPLHSSFIMGRMAIAAKQGGAAAIRAQGVNDINEIKEVTKLPIIGIIKRNYDDSEIYITPTMKEVDELLKTDCEMIALDATKRKRPNGENVKDLVDAIHAK--GRLAMADISTLEEGIEAEKLGFDCVSTTLSGYTPYSKQSN--SVDFELLEELVKTVKIPVICEGRINTPEELKKALDLGAYSAVVGGAITRPQQITKRFTD-----------
General information:
TITO was launched using:
RESULT:
Template:
4UTT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -133512 for 1905 contacts (-70.1/contact) +
2D Compatibility (PS) -23687 + (NN) -11380 + (LL) 1096
1D Compatibility (HY) -21200 + (ID) 5650
Total energy: -194333.0 ( -102.01 by residue)
QMean score : 0.631
(partial model without unconserved sides chains):
PDB file :
Tito_4UTT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4UTT-query.scw
PDB file :
Tito_Scwrl_4UTT.pdb
: