Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKMIVGLGNPGSKYNDTKHNIGFMAVDRIVKDLDVNFTEDKNFKAEIGSDFINGEKIYFIKPTTFMNNSGIAVKALLTYYNISIKDMIIIYDDLDMEVGKIRFRQKGSAGGHNGIKSIIAHLGTQ-EFDRIKVGIGRPNGRMTVINHVLGKFDKNDEIMILNTLDKVDNAVNYYLQTNDFQKTMQKYNGLK
4QBK Chain:A ((4-193))
-VQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQLGNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSIDFALGVLPEML-AGDWTRAMQKLHSQK
General information:
TITO was launched using:
RESULT:
Template:
4QBK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105045 for 1590 contacts (-66.1/contact) +
2D Compatibility (PS) -19989 + (NN) -6156 + (LL) 328
1D Compatibility (HY) -10800 + (ID) 3250
Total energy: -144912.0 ( -91.14 by residue)
QMean score : 0.577
(partial model without unconserved sides chains):
PDB file :
Tito_4QBK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QBK-query.scw
PDB file :
Tito_Scwrl_4QBK.pdb
: