Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLHELKPAEGSRKVRNRVGRGTSSGN-GKTSGRGQKGQKARSGGG-------------VRLGFEGGQTPLFRRMPKRGFSNINA--KEYALVNLDQLNVF------EDGTEVTPVVLKEAGIVRAEKSG-VKILGNGELTKKLSVKAAKFSKSAEAAITAKGGSIEVI-------
1JJ2 Chain:K ((1-150))
----------TSKKKRQRGSRTHGGGSHKNRRGAGHRGGRGDAGRDKHEFHNHEPLGKS-------------------GFKRPQKVQEEAATIDVREIDENVTLLAADDVAEFRVDVRDVVEEAD--DADYVKVLGAGQVRHELTLIADDFSEGAREKVEGAGGSVELTDLGEERQ
General information:
TITO was launched using:
RESULT:
Template:
1JJ2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19401 for 692 contacts (-28.0/contact) +
2D Compatibility (PS) -12723 + (NN) -4616 + (LL) 2152
1D Compatibility (HY) -1600 + (ID) 1550
Total energy: -37738.0 ( -54.53 by residue)
QMean score : 0.506
(partial model without unconserved sides chains):
PDB file :
Tito_1JJ2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JJ2-query.scw
PDB file :
Tito_Scwrl_1JJ2.pdb
: