Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSHAWKELTFYKKKYLLIELLIIVMMFMVVFLSGLANGLGRAVSAAIENNPAQTYILNEGAEQVITSSVLTTKDQTDLNSLNLKDSTTLNIQRSSLTRQGHEKKIDISYFAIDKDSFMAPTLSEGKQLTSYKKAIILNDSLKAEGIKLGDKVIDKSSSISLTVVGFVHNSMYGHGPVAFIDKDIYTEINKKINPQYQFLPQALVMKNDKSISHLPTQLEAVSKKDVIQHIPGYSAEQSTLNMILW---VLVVASAGILGVFFYIITLQKRHEFSVMKAIGTKMSEIALFQLSQVII-----LALFGIIVGDGLAIALSYVLPAQMPFVINWQNIILVSFVFLVIAMISSALSIVKVAKIDPVEVINGGGE |
2IC8 Chain:A ((1-182)) | -----------------------------------------------------------------------------------------------------------------------------------------------ERAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFVDSLNA--------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2IC8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -77730 for 1391 contacts (-55.9/contact) +
2D Compatibility (PS) -16918 + (NN) 5040 + (LL) 15328
1D Compatibility (HY) -7200 + (ID) 1000
Total energy: -82480.0 ( -59.30 by residue)
QMean score : 0.052
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