Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKYSIRGENIEVTEAIREYVETKLSKVEKYFNEAQELDTRVNLKVYREKTAKVEVTILIDSITLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKYREKIPASQVFTTEFEAEPDEEAVSQRIVRTKNVNLKPMDVEEALLQMELLGHDFFIYTDAEDNTTNVLYKREDGELGLIEAKGN
1L4S Chain:A ((1-98))
--TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQ---GFVADATINTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE-------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1L4S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29882 for 618 contacts (-48.4/contact) +
2D Compatibility (PS) -10395 + (NN) -541 + (LL) 6044
1D Compatibility (HY) -1600 + (ID) 1250
Total energy: -37624.0 ( -60.88 by residue)
QMean score : 0.405
(partial model without unconserved sides chains):
PDB file :
Tito_1L4S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1L4S-query.scw
PDB file :
Tito_Scwrl_1L4S.pdb
: