Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFHTKSLIQMAMMATLLVVLGFIPALPLGFIPVPIVLQNLGVMMAGVILGGRKGSLSILLFFLVGLVIPVFSGLRSTIPVLTGPTAGYVIAWLFVPLLISYGVKLVNKKNFIAIFLIVWLAGVLFVDVAGAVWLASYTNIP---LDKSLLQ-NLVFIPGDTIKAIIAAVVAVKYKDSFFLTEK
3RLB Chain:A ((17-184))
--NVRLLTEIAFMAALAFIISLIPNTVY--GWIIVEIACIPILLLSLRRGLTAGLVGGLIWGILSMITG----H-AYILSLSQAFLEYLVAPVSLGI-AGLFRQKTAPLK-LAPVLLGTFVAVLLKYFFHFIAGIIFWSQYAWKGWGAVAYSLAVNGISGILTAIAAFVILIIFVKKFPKLFI
General information:
TITO was launched using:
RESULT:
Template:
3RLB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -152309 for 1301 contacts (-117.1/contact) +
2D Compatibility (PS) -16638 + (NN) -5507 + (LL) 832
1D Compatibility (HY) -9600 + (ID) 1200
Total energy: -184422.0 ( -141.75 by residue)
QMean score : 0.292
(partial model without unconserved sides chains):
PDB file :
Tito_3RLB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RLB-query.scw
PDB file :
Tito_Scwrl_3RLB.pdb
: