Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKRIKPNKKRELLKAKGINWKDVRLSQTLQEVASPKKKAPEAPKAVDLLEGLTANKQDVLKEAGLVSLEAFAKVSEADVLALKGIGPAAIKQLVDNGVVFAK
2A1J Chain:B ((34-81))
----------------------------------------------LTTVKSVNKTDSQTLLTT-FGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEPFL
General information:
TITO was launched using:
RESULT:
Template:
2A1J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32675 for 304 contacts (-107.5/contact) +
2D Compatibility (PS) -5080 + (NN) -1306 + (LL) 3136
1D Compatibility (HY) -2400 + (ID) 500
Total energy: -38825.0 ( -127.71 by residue)
QMean score : 0.666
(partial model without unconserved sides chains):
PDB file :
Tito_2A1J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2A1J-query.scw
PDB file :
Tito_Scwrl_2A1J.pdb
: