Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---------MSDVVEKQTAKSFIMNVLNGLALGTVIVLIPGAILGELMKALLPMWSGFATLIAATAVATSMMGLVIGIMVGLNFKFNPIQSASLGLAVMFAGGAATFLKGA-IMLKGTGDIINMGITAALGVLLIQFLSDKTKSFTLI----VIPTVTLLLVGGVGHVLLPYVKMITTMIGQGIASLLGLQPVLMSILIAM------------IFC---------------------FL-----IVSPITTVGIALAISLSGI------------------GSGAANLG------------------------ICAASFG-LCMAGW------------------------SVNS-KGTALAHVLGSPKISMANVLAKPK---IMLPMIS------SAAILGILGALFNIQGT------------PASAGFGISGLIGPINALNLAKGG--WSVMNM-------------LLIIIIFVAAPIILNFIFNYLFIKVLKIIDP-MDYKLDI------------------- |
| 4K0V Chain:A ((1-514)) | AMDLILINSLPLVSDAETSLTCIASGWRPHEPITIGRDFE-----ALMNQHQDPLEVTQDVTREWAKKVVWKREKASKINGAYFCEGRVRGEAIRIRTMKMRQQASFLPATLTMTVDKGDNVNISFKKVL---------IKEEDAVIYKNGSFIHSVPRHEVPDILEVHLPHAQPQDAGVYSARYIGGNLFTSAFTRLIVRRCEAQKWGPECNHLCTACMNNGVCHEDTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQGCLCSPGWQGLQCEREGIPRMTPKIVDLPDHIEVNSGKFNPICKASGWPLPTNEEMTLVKPDGTVLHPKDFNHTDHFSVAIFTIHRILPPDSGVWVCSVNTVAGMVEKPFNISVKVLPKPLNAPNVIDTGHNFAVINISSEPYFGDGPIKSKKLLYKPVNHYEAWQHIQVTNEIVTLNYLEPRTEYELCVQLVRRGEGGEGHPGPVRRF |
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General information:
TITO was launched using:
| RESULT:
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Template: 4K0V.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -214766 for 2097 contacts (-102.4/contact) +
2D Compatibility (PS) -34777 + (NN) 18898 + (LL) 1156
1D Compatibility (HY) -2400 + (ID) 3500
Total energy: -235389.0 ( -112.25 by residue)
QMean score : -0.125
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