Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAKTALNIPFTVEGIENYYQNIKMILSLADKWSIPKDDLLLFLKGLKAIDDIKVGSPIFKYFWTSLSLQAPLKALEFVLEQAKMPTELS-GELSETQYLVAQFSDELAPHDDFWIALS-------QVIYDSFPGNSLAEDTVLNRKLHQFRYLISSQQAQYVRRYFKDVGMTDRDALVNYLSCLREPDNIAY----YESARLHNKRRR-------NGEIFAFPDDEPVINSKLLISFHTEFIIDDKGNFLNEIDAEVITSNGIINGASFNYAFKNNT----------RHKELDVDPVKLDPKF-------RNDMTRGYRSPNLSRRKWFFFKEEDYD----CSYFNKKGYYAFGRRSAKQSVDKQVKYLK--KAVQKMRLN |
| 2Y38 Chain:A ((8-398)) | --GFSLHPPY---------------FNLAEGARITAS------ATCHPVSNAIDGTE---RWWQSPPLSRGL-------EYNEVNVTLDLGQVFHVAYVLIKFAN--SPRPDLWVLERSTDFGHTYQPWQFFASSKRDCLERFGPR--TLERITQDDDVICTTEYSRIVPLENGEIVVSLVNGRPGALNFSYSPLLRDFTKATNIRLRFLRTNTLLGHLMGKALRDPTVTRRYYYSIKD---ISIGGRCVCHGHADVCDAKDPLDPFRLQCACQHNTCGGSCDRCCPGFNQQPWKPATTDSANECQSCNCHGHAYDCYYDPEVDRREASQNQDNVYQGGGVCLDCQHHTTGINCERCLPGFFRAPDQPLDSPHVCRPAAAH |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2Y38.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) 2623 for 2091 contacts (1.3/contact) +
2D Compatibility (PS) -30158 + (NN) 6371 + (LL) 4748
1D Compatibility (HY) -8400 + (ID) 2350
Total energy: -27166.0 ( -12.99 by residue)
QMean score : 0.152
|
|
|