Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTVYLSLGSNIGDRETFLKQALFSIDHLQKTKVAQISAIYETAAWGNTNQEDFFNICCQVETDLAPFELLDYCQEIEKRLKRVRH-EHWGPRTIDIDILLFGNQVINQEDLVVPHPYMTKRAFVLVPLLEIAPQLSLPNGSKLEDYL-----EKLNLGEVHYLKPVE
4M5N Chain:B ((4-160))
MTVAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNKW---------
General information:
TITO was launched using:
RESULT:
Template:
4M5N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -126027 for 1181 contacts (-106.7/contact) +
2D Compatibility (PS) -16184 + (NN) -7396 + (LL) 536
1D Compatibility (HY) -14800 + (ID) 3400
Total energy: -167271.0 ( -141.64 by residue)
QMean score : 0.572
(partial model without unconserved sides chains):
PDB file :
Tito_4M5N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M5N-query.scw
PDB file :
Tito_Scwrl_4M5N.pdb
: