Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYKDYTGLDRTELLSKVRHMMSDKRFNHVLGVERAAIELAERYGY-DKEKAGLAALLHDYAKELSDDEFLRL-------IDKYQLDP-DLKKWGNNIWHGLVGIYKIQEDLAIKDQDILAAIAKHTVGS--A-QMSTLDKIVYVADYIEHNRDFPGVEEARELAKVDLNKAVAYETARTVSFLASKAQPIYPKTIETYNAYIPYLD
3HC1 Chain:A ((117-242))
-----------------------STLWAHSLGVARIAKLIAERTGFLNPVNVYVAGLLHDVGEVFINFFRGKEFSQVVTLVDEEKITFGQAEERLFGTSHCEVGFALAKR-WSLN-EFICDTILYHHDIEAVPYKQAAIVAMVAFADEYCTLRRLGFEGHKPVDSVRTLLENHPSWGVIRRSLGGSDFDEKLIVAELDSSIVEIRAA
General information:
TITO was launched using:
RESULT:
Template:
3HC1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31445 for 835 contacts (-37.7/contact) +
2D Compatibility (PS) -12364 + (NN) -5632 + (LL) 1628
1D Compatibility (HY) -2400 + (ID) 1250
Total energy: -51463.0 ( -61.63 by residue)
QMean score : 0.494
(partial model without unconserved sides chains):
PDB file :
Tito_3HC1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HC1-query.scw
PDB file :
Tito_Scwrl_3HC1.pdb
: