Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALELLTPFTKVELEEKKRDTNRKQIGIMGGNFNPVHNAHLVVADQVRQQLCLDQVLLMPEFQPPHIDKKETIDEQHRLKMLELAIEGIDGLSIEPIEIERKGISYTYDTMKLLIEKNPDVDYYFIIGADMVEYLPKWHRIDELVKMVQFVGVQRPKYKAGTSYPVIWVDLPLMDISSSMIRQFIKSNRQPNYLLPKEVLDYIRKEGLYK
3DV2 Chain:D ((2-188))
-----------------------RKIGIIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIPPHKQGRNITSVESRLQMLELATEAEEHFSICLEELSRKGPSYTYDTMLQLTKKYPDVQFHFIIGGDMVEYLPKWYNIEALLDLVTFVGVARPGYKLRTPYPITTVEIPEFAVSSSLLRERYKEKKTCKYLLPEKVQVYIERNGLYE
General information:
TITO was launched using:
RESULT:
Template:
3DV2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -158453 for 1418 contacts (-111.7/contact) +
2D Compatibility (PS) -20588 + (NN) -14799 + (LL) 2048
1D Compatibility (HY) -17600 + (ID) 4450
Total energy: -213842.0 ( -150.81 by residue)
QMean score : 0.591
(partial model without unconserved sides chains):
PDB file :
Tito_3DV2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DV2-query.scw
PDB file :
Tito_Scwrl_3DV2.pdb
: