Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQ-SGE--READFINCVIWRQQAENLANWAKKGALVGITGRIQTRNYENQQGQRVYVTEVVAE---SFQLLESRATREGGSPNSYNNGGYNNAPSNNSYSASSQQTPNFSRDESPFGNSNPMDISDDDLPF
1EYG Chain:D ((6-116))
-VNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKA---MKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGR---------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1EYG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55854 for 636 contacts (-87.8/contact) +
2D Compatibility (PS) -10840 + (NN) -1229 + (LL) -632
1D Compatibility (HY) -8800 + (ID) 1800
Total energy: -79155.0 ( -124.46 by residue)
QMean score : 0.699
(partial model without unconserved sides chains):
PDB file :
Tito_1EYG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1EYG-query.scw
PDB file :
Tito_Scwrl_1EYG.pdb
: