Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIKEYENNPYHLAQLVDLINYCQNIEAKLDIKMAEQDDIFQIENYYQNRKGQFWIALENEKVVGSIALLRID-------------DKTAVLKKFFTYPKYRGNPVRLGRKLFERFMLFARASKFTRIVLDTPEKEKRSHFFYENQGFKQITRDELDVDYIFPDRDSRIYVKLLD
3H4Q Chain:A ((19-186))
--GMIRLGKMSDLDQILNLVEEAKELMK--------YPLLEHFEEDIA--KDYLYVLEENDKIYGFIVVDQDQAEWYDDIDWPVNREGAFVIHRLTGSKEY--K--GAATELFNYVIDVVKARGAEVILTDTFALNKPAQGLFAKFGFHKV--------------PFYAYYKNLK
General information:
TITO was launched using:
RESULT:
Template:
3H4Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56722 for 964 contacts (-58.8/contact) +
2D Compatibility (PS) -14133 + (NN) -7051 + (LL) 1908
1D Compatibility (HY) -6000 + (ID) 1200
Total energy: -83198.0 ( -86.30 by residue)
QMean score : 0.471
(partial model without unconserved sides chains):
PDB file :
Tito_3H4Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3H4Q-query.scw
PDB file :
Tito_Scwrl_3H4Q.pdb
: