Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDDGVSFTGSDSDISIESFIPKEEGDKEIVTIEQPGSIVLQARFFSEIVKKLPMAT-VEIEVQNQYLTI-IRSGKAEFNLNGLDADEYPHLPQIEEHHAIQIPTDLLKNLIRQTVFAVSTSETRPILTGVNWKVEQSELLCTATDSHRLALRKAKLDIPEDRSYNVVIPGKSLTELSKILDDNQELVDIVITETQVLFKAKNVLFFSRLLDGNYPDTTSLIPQDSKTEIIVNTKEFLQAIDRASLLAREGRNNVVKLSAKPAESIEISSNSPEIGKVVEAIVADQIEGEELNISFSPKYMLDALKVLEGAEIRVSFTGAMRPFLIRTPNDETIVQLILPVRTY |
4TR8 Chain:A ((17-382)) | MHFTIQREALLKPLQLVAGVVE---TLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE-------DAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQ--KLLVKAGRSRFTLSTLPANDFPTVEEGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAMCSLDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLVDGKFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYR-GIRLQLS-NGLLKIQANNPEQEEAEEEVQV-EYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEADNDDSAYVVMPMR-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4TR8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -244262 for 2918 contacts (-83.7/contact) +
2D Compatibility (PS) -39335 + (NN) -14641 + (LL) 660
1D Compatibility (HY) -28400 + (ID) 4850
Total energy: -330828.0 ( -113.37 by residue)
QMean score : 0.519
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