Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGFLRKKTLRREFDEKLTEQLFKQKEEWNRQKKLVEKSLEPSAEVLY--------ELKVAEAKYFFYLREAKQRNLKISRWK
2H3J Chain:A ((1-75))
-----MSALQPSRSYRITG--YSPAISNGYRQRLFSMGLLPGAALRVVRIAPLGDPIQVETRQTSLALRRKDLALLTLVPLD
General information:
TITO was launched using:
RESULT:
Template:
2H3J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 7746 for 390 contacts (19.9/contact) +
2D Compatibility (PS) -6990 + (NN) -276 + (LL) 740
1D Compatibility (HY) -3600 + (ID) 500
Total energy: -2880.0 ( -7.38 by residue)
QMean score : 0.227
(partial model without unconserved sides chains):
PDB file :
Tito_2H3J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2H3J-query.scw
PDB file :
Tito_Scwrl_2H3J.pdb
: