Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDETVKLNHTCVICDQEKNRGIHL----YTKFICLDCERKVISTSTSDPDYAFYVKKLKSIHTPPLYS
2VJE Chain:A ((5-64))
----LNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYFP----
General information:
TITO was launched using:
RESULT:
Template:
2VJE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2754 for 374 contacts (-7.4/contact) +
2D Compatibility (PS) -5614 + (NN) 80 + (LL) 388
1D Compatibility (HY) -3200 + (ID) 500
Total energy: -11600.0 ( -31.02 by residue)
QMean score : 0.277
(partial model without unconserved sides chains):
PDB file :
Tito_2VJE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VJE-query.scw
PDB file :
Tito_Scwrl_2VJE.pdb
: