Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLVIAGLGNPGKNYENTRHNVGFMVIDQLAKEWNIELNQNKFNGL-YGTGFVSGKKVLLVKPLTYMNLSGECLRPLMDYYDVDNEDLTVIYDDLDLPTGKIRLRTKGSAGGHNGIKSLIQHLGTSEFDRIRIGIGRPVNGMKVVDYVLGSFTKEEAPEIEEAVDKSVKACEASLSKPFLEVMNEFNAKV
3KK0 Chain:A ((5-190))
-LLVVGLGNPGPTYAKTRHNLGFMVADVLAGRIGSAFKVHKKSGAEVVTGRLAGTTVVLAKPRISMNESGRQVGPLAKFYSVPPQQIVVIHDELDIDFGRIRLKLGGGEGGHNGLRSVASALGTKNFHRVRIGVGRPPGRKDPAAFVLENFTSAERAEVPTIVEQAADATELLIAQGLEPAQNTVHA--
General information:
TITO was launched using:
RESULT:
Template:
3KK0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73654 for 1211 contacts (-60.8/contact) +
2D Compatibility (PS) -20181 + (NN) -7163 + (LL) 464
1D Compatibility (HY) -9600 + (ID) 3700
Total energy: -113834.0 ( -94.00 by residue)
QMean score : 0.619
(partial model without unconserved sides chains):
PDB file :
Tito_3KK0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KK0-query.scw
PDB file :
Tito_Scwrl_3KK0.pdb
: