Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSYDVVIPAAGQGKRMKAGRNKLFIELKGDPVIIHTLRVFDSHRQCDKIILVINEQEREHFQQLLSDYPFQTSIELVAGGDERQHSVYKGLKAVKQ-----EKIVLVHDGARPFIKHEQIDELI-AEAEQTGAAILAVPVKDTIKRVQ--DLQVSETIERSSLWAVQTPQAFRLSLLMKAHAEAERKGFLGTDDASLVEQMEGGSVRVVEGSYTNIKLTTPDDLTSAEAIMESESGNKHV
4YS8 Chain:D ((12-234))
----ALIPCAG--------------TLAGRALLHYTLAAFDACSEFAQTLVVISPDDAHFDARRFAGLRFAVR---RCGGASRQASVMNGLIQLAEFGATDADWVLVHDAARPGITPALIRTLIGALKDDPVGGIVALPVADTLKRVPAGGDAIERTESRNGLWQAQTPQMFRIGMLRDAIQRAQLEGRDLTDEASAIE-WAGHTPRVVQGSLRNFKVTYPEDFDLAEAIL---------
General information:
TITO was launched using:
RESULT:
Template:
4YS8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92498 for 1539 contacts (-60.1/contact) +
2D Compatibility (PS) -21984 + (NN) -6929 + (LL) 1952
1D Compatibility (HY) -13600 + (ID) 3850
Total energy: -136909.0 ( -88.96 by residue)
QMean score : 0.489
(partial model without unconserved sides chains):
PDB file :
Tito_4YS8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YS8-query.scw
PDB file :
Tito_Scwrl_4YS8.pdb
: