Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNALVAHNSKAWDKKVETGNEWTVAVEQQVIEQAKKGNWDIRVT--PMKDVPKDWFPPIKGLKVLCLASGGGQQGPVLAAAGADVTVLDNSEKQLNQDRMIAERDGLTIHTVKG-SMDDLSVFNDESFDVIVH---PVANVFVENVLPVWKEAYRVLKRNGI-LISGFVNPVVFLFDTELEQQGVL--KVKHS-IPYADPEDLPKHKVKKLIENNEALEFGHSLEDQIKGQIDAGFIVTGFYEDKGGFVLDQYIHTYSATRSVKV |
| 3GGD Chain:A ((3-245)) | ------EKLSAIKKPDINVADAWEQYWNKTLVNSTPVLWDANVERAVVVDLPRFELLFNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYFPDFEILSQGE------------GLFQSIHKLPDGNYATPPAFWAVIKHR---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GGD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -21785 for 1847 contacts (-11.8/contact) +
2D Compatibility (PS) -24760 + (NN) -8368 + (LL) 1988
1D Compatibility (HY) -5200 + (ID) 1850
Total energy: -59975.0 ( -32.47 by residue)
QMean score : 0.254
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