Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRKKLKWLSFLLGFIILLFLFKYQFSNNDSWKPWSLPLSGKIIYLDPGHGGPDGGAVGG-KLLEKDVTLEVAFRVRDYLQEQG-ALVIMTRESDTDLAPEGTKGYSRRKAEDLRQRVKLINHSEAELYISIHLNAIPSQKWSGAQSFYYGKYAENEKVAKYIQ--------------------------------------DELRRN-LENTTRKAKRIHGIYLMQNVTKPGALIEVGFLSNPSEATLLGKPKYQDKVASSIYKGILRYFTEKGDPPE |
3NE8 Chain:A ((3-230)) | --------------------------------------ASFRVVLDPGHGGIDGGARGVTGILEKDVTLAFARALRDELQKGSHTIVALTRDSDIFL--------------RLSERVKKAQEFDADLFISIHADTIDVHSLRGATVYTISDEA-SDAIAKSLAESENKVDLLDGLPKEDILLDLTRRETHAFSINFANNVVSNLSKSHINLINNPHRYA-DFQVLKAPDVPSVLIEIGYLSNKEDEKLLNNPQWRKQMAASIAYSIRQFAEYRQKI-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NE8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -54579 for 1489 contacts (-36.7/contact) +
2D Compatibility (PS) -19736 + (NN) -12434 + (LL) 3728
1D Compatibility (HY) -10400 + (ID) 3100
Total energy: -96521.0 ( -64.82 by residue)
QMean score : 0.511
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