Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKGSLSEHKAGNRRFTLYLPPSYSTDSGGFPAVYVQDGSSLFQN--QIELLESAFQQQRLPELVLIGIEPENRLDEYTPWPAASLSDRFTDFGGMGYHYLSDITNQFIPLIEENWNVTREPQSRGMIGASLGGLISMFAILKYPSMFGKIGSISGSYWYENAA-----ETIH---ISSLKPGTARVFMSIGSEEGREKQSIQRHMLKKTKQVHQSLKEKGFTEDQLCLSIEKGAVHHHKYFCKQFINALEWLYGKNRSTL
3C8D Chain:A ((179-399))
---------KNSRRVWIFTT-------EERPLAVLLDGEFWAQSMPVWPVLTSLTHRQQLPPAVYVLIDAIDTTHRAHEL-------------PCNADFWLAVQQELLPLVKVIAPFSDRADRTVVAGQSFGGLSALYAGLHWPERFGCVLSQSGSYWWPHRGGQQEGVLLEKLKAGEVSAEGLRIVLEAGIREPMI--------MRANQALYAQLHPIKES---IFWRQVDG-GHDALCWRGGLMQGLIDLWQPLF---
General information:
TITO was launched using:
RESULT:
Template:
3C8D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109425 for 1712 contacts (-63.9/contact) +
2D Compatibility (PS) -22242 + (NN) -10640 + (LL) 1960
1D Compatibility (HY) -12800 + (ID) 1950
Total energy: -155097.0 ( -90.59 by residue)
QMean score : 0.484
(partial model without unconserved sides chains):
PDB file :
Tito_3C8D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3C8D-query.scw
PDB file :
Tito_Scwrl_3C8D.pdb
: