Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMEQNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETFGRLDVFVNNAASGVLRP--VMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSIRYLENYTTVGVSKAALEALTRYLAVELSPKQIIVNAVSGGAIDTDALKHFPNREDLLEDARQNTPAGRMVEIKDMVDTVEFLVSSKADMIRGQTIIVDGGRSLLV
4JRO Chain:D ((28-268))--QGKVAVVTGGSRGIGRDIAINLAKEGANIFFNYNGSPEAAEETAKLVAEHGVEVEAMKANVAIAEDVDAFFKQAIERFGRVDILVNNA--GITRDNLLMRMKEDEWDDVININLKGTFLCTKAVSRTMMKQRAGKIINMASVVGLIGNAGQANYVASKAGVIGLTKTTARELAPRGINVNAVAPGFITTDMT---D--EKTKEAMLAQIPLGAYGTTEDIANAVLFLASDASKYITGQTLSVDGG-----


General information:
TITO was launched using:
RESULT:

Template: 4JRO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain D - contact count / total energy / energy per contact / energy per residue : 1322 -121075 -91.58 -513.03
target 2D structure prediction score : 0.66
Monomeric hydrophicity matching model chain D : 0.79

3D Compatibility (PKB) : -91.58
2D Compatibility (Sec. Struct. Predict.) : 0.66
1D Compatibility (Hydrophobicity) : 0.79
QMean score : 0.635

(partial model without unconserved sides chains):
PDB file : Tito_4JRO.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4JRO-query.scw
PDB file : Tito_Scwrl_4JRO.pdb: