Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMGSMDQSIAVKSPLTYAEALANTIMNTYT-V------EE------LPPANRWHYHQGVFLCGVLRLWEATGEKRYFEYAKAYADLLIDDNGNLLFRRDELDAIQAGLILFPLYEQTKDERYVKAAKRLRSLYGT-LNRTSEGGFWHKDG---YPYQMWLDGLYMGGPFALKYANLKQETELFDQVVLQESLMRKHTKDAKTGLFYHAWDEAKKMPWANEETGCSPEFWARSIGWYVMSLADMIEEL--PKKHPNRHVWKNTLQDMIKSICRYQDKETGLWYQIVDKGDRSDNWLESSGSCLYMYAIAKGINKGYLDRAYETTLLKAYQGLIQHKTETSEDGAFLVKDICVGTS-AGFYDYYVSRERSTNDLHGAGAFILAMTELEPLFRSAGK
3PMM Chain:A ((22-380))-------IARSELQALIRNVTQNLVNIKDESGQFLLRLDDGRVIDTKGWAGWEWTHGVGLYGIYQYYQQTGDIEMRDIIDRWFADRFAEGAT----TKNVNTMAPFLTLAYRFEETGRMAYLPWLESWAEWAMHEMPRTEQGGMQHMTLAEENHQQMWDDTLMMTVLPLAKIGKLLNRPQYVEEATYQFLLHVQNLMDRETGLWFHGWNYEGR-------HNFARARWARGNSWLTMVIPDFLELVDLPEGNAVRRYLITVLDAQIAALAECQD-DSGLWHTLLDDP---HSYLEASATAGFAYGILKAVRKRYVGQHYAGVAEKAIRGIVQN-IS--PQGEL--LQTSFGTGMGSDLDFYRQIPLT-SMPYGQAMAILCLTEYLRK------


General information:
TITO was launched using:
RESULT:

Template: 3PMM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1678 34265 20.42 101.08
target 2D structure prediction score : 0.63
Monomeric hydrophicity matching model chain A : 0.72

3D Compatibility (PKB) : 20.42
2D Compatibility (Sec. Struct. Predict.) : 0.63
1D Compatibility (Hydrophobicity) : 0.72
QMean score : 0.499

(partial model without unconserved sides chains):
PDB file : Tito_3PMM.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3PMM-query.scw
PDB file : Tito_Scwrl_3PMM.pdb: