Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMIMKMTHLNMKDFNKPNEPFVVFGRMIPAFENGVWTYTEERFSKPYFKQYEDDDMDVSYVEEEGKAAFLYYLENNCIGRIKIRSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKENHFCGLMLETQDINISACHFYAKHHFIIGAVDTMLYSNFPTANEIAIFWYYKF
1VKC Chain:B ((92-147))-----------------------------------------------------------------------------------------AYIYDIEVVKWARGLGIGSALLRKAEEWAKERGAKKIVLRVE-IDNPAVKWYEERGY---------------------------


General information:
TITO was launched using:
RESULT:

Template: 1VKC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 114 -28843 -253.01 -515.05
target 2D structure prediction score : 0.52
Monomeric hydrophicity matching model chain B : 0.58

3D Compatibility (PKB) : -253.01
2D Compatibility (Sec. Struct. Predict.) : 0.52
1D Compatibility (Hydrophobicity) : 0.58
QMean score : 0.441

(partial model without unconserved sides chains):
PDB file : Tito_1VKC.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1VKC-query.scw
PDB file : Tito_Scwrl_1VKC.pdb: