Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDECVVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARAALDALPYLIDNRYPHSPRLIEYTWQL--R-----HNVTFYDALYVALATALDVPLLTGDSRLAAAPGLPCEIKLVR
3DBO Chain:B ((20-148))
PAAGVLDTSVFIA------QLD----EALIPDRVATTVVTLAELRVGVLAAATTDI--RAQRLATLESV--ADMETLPVDDDAARMWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDDFAALDGAA-SVEII-
General information:
TITO was launched using:
RESULT:
Template:
3DBO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62944 for 881 contacts (-71.4/contact) +
2D Compatibility (PS) -12383 + (NN) -949 + (LL) 1140
1D Compatibility (HY) -3600 + (ID) 1100
Total energy: -79836.0 ( -90.62 by residue)
QMean score : 0.466
(partial model without unconserved sides chains):
PDB file :
Tito_3DBO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DBO-query.scw
PDB file :
Tito_Scwrl_3DBO.pdb
: