Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQDSIFNLLTEEQLRGRNTLKWNYF--GPDVVPLWLAEMDFPTAPAVLDGVRACVDNEEFGYPPLGE-DSLPRATADWCRQRYGWCPRPDWVRVVPDVLKGMEVVVEFLTRPESPVALPVPAYMPFFDVLHVTGRQRVEVPMVQQDSGRYLLDLDALQAAF-VRGAGSVIICNPNNPLGTAFTEAELRAIVDIAARHGARVIADEIWAPVVYG-SRHVAAASVSEAAAEVVVTLVSASKGWNLPGLMCAQVILSNRRDAHDWDRINM-LHRMGASTVGIRANIAAYHHGESWLDELLPYLRANRDHLARALPELAPGVEVNAPDGTYLSWVDFRALA-LPSEPAEYLLSKAKVALSPGIPFGAAVGSGFARLNFATTRAILDRAIEAIAAALRDIID |
| 3B1D Chain:A ((6-391)) | ---SKYNFQTAPNRLSHHTYKWKETETDPQLLPAWIADMDFEVMPEVKQAIHDYAEQ--LVYGYTYASDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAFTKEGEAVLINSPVYPPFARSVRLNNRKLVSNSLKE-ENGLFQIDFEQLENDIVENDVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYGKPWLVALKAVLEENIQFAVEYFAQEAPRLKVMKPQGTYLIWLDFSDYGLTDDALFTLLHDQAKVILNRGSDYGS-EGELHARLNIAAPKSLVEEICKRIVCCLP---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3B1D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -250098 for 3269 contacts (-76.5/contact) +
2D Compatibility (PS) -41279 + (NN) -19094 + (LL) 980
1D Compatibility (HY) -19200 + (ID) 4750
Total energy: -333441.0 ( -102.00 by residue)
QMean score : 0.501
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