Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----------MPAVTTPSNHWGDERRKLSHQPPVRGQILGRRQARRLSQHFARV----GVEAPPKRL--QEMLLGAPAADEEWTDVKFALIVTQLN-HEKRVAKFHRLQRRATHSLICLGLVLVALNFLICLAYIFFSLTQHAAAL-----
1JB0 Chain:L ((4-154))
LVKPYNGDPFVGHLSTPISDSGLVKTFIGNLPAYRQGLSPILRGLEVGMAHGYFLIGPWVKLGPLRDSDVANLGGLISGIALILVATACLAAYGLVSFQKGGSSSDPLKTSEGWSQFTAGFFVGAMGSAFVAFFLLENFLVVDGIMTGLFN
General information:
TITO was launched using:
RESULT:
Template:
1JB0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37868 for 808 contacts (-46.9/contact) +
2D Compatibility (PS) -14056 + (NN) -9945 + (LL) 0
1D Compatibility (HY) -2000 + (ID) 850
Total energy: -64719.0 ( -80.10 by residue)
QMean score : 0.347
(partial model without unconserved sides chains):
PDB file :
Tito_1JB0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JB0-query.scw
PDB file :
Tito_Scwrl_1JB0.pdb
: