Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEPKRSRLVVCAPEPSHAREFPDVAVFSGGRANASQAERLARAVGRVLADRGVTGGARVRLTMA--NCADGPTLVQINLQVGDTPLRAQAATAGIDDLRPALIRLDRQIVRASAQWCPRPWPDRPRRRLTTPAEALVTRRKPVVL-----RRATPLQAIAAMDAMDYDVHLFTDAETGEDAVVYRAGPSGLRLARQHHVFPPGWSRCRAPAGPPVPLIVNSRPTPVLTEAAAVDRAREHGLPFLFFTDQATGRGQLLYSRYDGNLGLITPTGDGVADGLA |
| 2BNE Chain:A ((5-241)) | AKPVYKRILLKLSGEALQGT-------EGFGIDASILDRMAQEIKELVEL-----GIQVGVVIGGGNLFRGAGLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNARLMS---AIPLNGVCDSYSWAEAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEANVVLKATKVDG--VFTADPP------------------TATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVFN--MNKPGALRRVVMGEKEGTLITE--------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2BNE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -58259 for 1885 contacts (-30.9/contact) +
2D Compatibility (PS) -25288 + (NN) -19163 + (LL) 2164
1D Compatibility (HY) -5600 + (ID) 1850
Total energy: -107996.0 ( -57.29 by residue)
QMean score : 0.365
|
|
|