Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTLKVKGEGLGAQVTGV-DPKNLDDITTDEIRDIVYTNKLVVLKDVH-PSPREFIKLGRIIGQIVPYYEPMYHHEDHPEIFVSSTEEGQGVPKTGAFWHIDYMFMPEPFAFSMVLPLAVPGHDRGTYFIDLARVWQSLPAAKRDPARGTVSTHDPRRHIKIRPSDVYRPIGEVWDEINRTTPPIKWPTVIRHPKTGQEILYICATGTTKIEDKDGNPVDPEVLQELMAATGQLDPEYQSPFIHTQHYQVGDIILWDNRVLMHRAKHGSAAGTLTTYRLTMLDGLKTPGYAA |
4CVY Chain:A ((6-280)) | -TVKKLGSRIGAQIDGVRLGGDLDPAAVNEIRAALLAHKVVFFRGQHQLDDAEQLAFAGLLGTPI------------------------------NRWHTDVTFAANYPAASVLRAVSLPSYGGSTLWANTAAAYAELPEPLKCLTENLWALHTN-------------------------DFRTEHPVVRVHPETGERTLLAGDF-VRSFVGLDSHES-RVLFEVLQRRITM------PENTIRWNWAPGDVAIWDNRATQHRAIDDYDDQHRLMHRVTLMGDVPVDVYG- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4CVY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -125479 for 1792 contacts (-70.0/contact) +
2D Compatibility (PS) -24239 + (NN) -9763 + (LL) 2920
1D Compatibility (HY) -4800 + (ID) 2550
Total energy: -163911.0 ( -91.47 by residue)
QMean score : 0.472
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