Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRTPVILVAGQDHT--DEVTGALLR-R-TGTVVVEHRFDGHVVRRMTATLSRGELITTEDALEFAHGCVSCTIRDDLLVLLRRLHR----RDNVGRIVVHLAPWLEPQPICWAIDHVRVCVGHGYPDGPAALDVRVAAVVTCVDCVRWLPQSLGEDELPDGRTVAQVTVGQAEFADLLVLTHPE-P-----V---AVAVLRRLAPRARITGGVDRVELALAHLDDNSRRGRTDTPHTPLLAGLPPLAADGEVAIVEFSARRPFHPQRLHAAVDLLLDGVVRTRGRLWLANRPDQVMWLESAGGGLRVASAGKWLAAMAASEVAYVDLERRLFADLMWVYPFGDRHTAMTVLVCGADPTDIVNALNAALLSDDEMASPQRWQSYVDPFGDWHDDPCHEMPDAAGEFSAHRNSGESR |
| 4LPS Chain:A ((45-212)) | -GLYVLNFMSSPGSGKTTMLENLADFKDFKFCVVEGDLQTNRDADRLRKK-------GVSAHQITTGEACHLEASMIEG-AFDLLKDEGALEKSDFLIIENVGNLVCPS---SY------------------NLGAAMNIVLLSVPEGDDKVL-------------KYPTMFMCADAVIISKADMVEVFNFRVSQVKEDMQKLKPEAPIFL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LPS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -101769 for 1159 contacts (-87.8/contact) +
2D Compatibility (PS) -16314 + (NN) -10121 + (LL) 14416
1D Compatibility (HY) -800 + (ID) 850
Total energy: -115438.0 ( -99.60 by residue)
QMean score : 0.405
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