Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRTFESVADLAAAAGEKVGQSDWVTITQEEVNLFADATGDHQWIHVDPERAAAGPFGTTIAHGFMTLALLPRLQHQMYTVKGVKLAINYGLNKVRFPAPVPV-----GSRVRATSSLVGVEDLGNGTVQATVSTTVEVEGSAKPACVAESIVRYVA
4RLJ Chain:B ((5-144))
SMALREFSSVK--VGDQLP-EKTYPLTRQDLVNYAGVSGDLNPIHWDDEIAKVVGLDTAIAHGMLTMGIGGGYVTSW--VGD--PGAV-TEYNVRFTAVVPVPNDGKGAELVFNGRVKSVDPES---KSVTIALTATTG-G-KKIF-GRAIASA--
General information:
TITO was launched using:
RESULT:
Template:
4RLJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63411 for 974 contacts (-65.1/contact) +
2D Compatibility (PS) -14817 + (NN) -3478 + (LL) 1200
1D Compatibility (HY) -5600 + (ID) 1500
Total energy: -87606.0 ( -89.94 by residue)
QMean score : 0.472
(partial model without unconserved sides chains):
PDB file :
Tito_4RLJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RLJ-query.scw
PDB file :
Tito_Scwrl_4RLJ.pdb
: