Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTPQARPARRADVRELSRTMARAFYDD-PVMSWLLSNDN-ARTARLTRLFATIVRHQHLAGGGVEVAR-GAAGIGGAALWDPPDRWRESRRQQLAMTPGFLRVFGFRTAKARAALD---VMMRVHPEEPHWYLAAIGSDPTVRGQGFGQVLMRSRLDRCDAEHCP-AYLESTKPENVPYYQRFGFRVTREIALPDAGPPLWAMWREPR
4FD5 Chain:A ((7-193))
NNIRFETISSKYYDDVIEHLRQTFFADEPLNKAVNLTRPGQGHPLLEQHSLSTL-----KDNVSIMAISNDGDIAGVALNGILYGNTDIEK-SREKLNEIQDESFKKIFKLLYEQNLKINLFKQFDVDKIFEIRILSVDSRFRGKGLAKKLIEKSEELALDRGFQVMKTDATGAFSQRVVSSLGFITKCEINY---------------
General information:
TITO was launched using:
RESULT:
Template:
4FD5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57293 for 1313 contacts (-43.6/contact) +
2D Compatibility (PS) -18639 + (NN) -3941 + (LL) 1084
1D Compatibility (HY) -800 + (ID) 1000
Total energy: -80589.0 ( -61.38 by residue)
QMean score : 0.306
(partial model without unconserved sides chains):
PDB file :
Tito_4FD5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4FD5-query.scw
PDB file :
Tito_Scwrl_4FD5.pdb
: