Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPGVQDRVIVVTGAGGGLGREYALTLAGEGASVVVNDLGGARDGTGA-GSAMADEVVAEIRDKGGRAVANYDSVATEDGAANIIKTALDEFGAVHGVVSNAGILRDGTFHKMSFENWDAVLKVHLYGGYHVLRAAWPHFREQSY------GRVVVATSTSGLFGNFGQTNYGAAKLGLVGLINTLALEGAKYNIHANALAPIAATRMTQDILPPEVLEKLTPEFVAPVVAYLCTEECAD-NASVYVVGGGKVQRVALFGNDGANFDKPPSVQDVAARWAEITDLSGAKIAGFKL
3QLJ Chain:F ((25-297))
---VDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAAGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGAGLQGSVGQGNYSAAKAGIATLTLVGAAEMGRYGVTVNAIAPSAR------------FDAMAPENVSPLVVWLGSAEARDVTGKVFEVEGGKI-RVAEGWAHGPQIDK-------GARW----------------
General information:
TITO was launched using:
RESULT:
Template:
3QLJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -166776 for 2119 contacts (-78.7/contact) +
2D Compatibility (PS) -26834 + (NN) -11616 + (LL) 2148
1D Compatibility (HY) -14400 + (ID) 5650
Total energy: -223128.0 ( -105.30 by residue)
QMean score : 0.531
(partial model without unconserved sides chains):
PDB file :
Tito_3QLJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QLJ-query.scw
PDB file :
Tito_Scwrl_3QLJ.pdb
: