Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNRFLTSIVAWLRAGYPEGIPPTDSFAVLALLCR-----RLSHDEVKAVANELMRLGDFDQIDIGVVITHFTDELPSPEDVERVRARLAAQGWPLDDVRDREEHA
4GA6 Chain:A ((72-154))
------------SEGETVSVIPAGTPESVRYIKKKMHGEKLRKVEIEAIVRDIVD-RKLRDIEISSFVTALEINGLDMDEIAALTIAMAETGDMLD---------
General information:
TITO was launched using:
RESULT:
Template:
4GA6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24454 for 443 contacts (-55.2/contact) +
2D Compatibility (PS) -8485 + (NN) -5258 + (LL) 2244
1D Compatibility (HY) -4800 + (ID) 600
Total energy: -41353.0 ( -93.35 by residue)
QMean score : 0.395
(partial model without unconserved sides chains):
PDB file :
Tito_4GA6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GA6-query.scw
PDB file :
Tito_Scwrl_4GA6.pdb
: