Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSSGAGSDATGAGGVHAAGSGDRAVAAAVERAKATAARNIPAFDDLPVPADTANLREGADLNNALLALLPLVGVWRGEGEGRGP-DGDYRFGQQIVVSHDGGDYLNWESRSWRLTATGD-YQEPGLREAGFWRFVADPYDPSESQAIELLLAHSAGYVELFYGRPR-TQSSWELVTDALARSRSGVLVGGAKRLYGIVEGGDLAYVEE-RVDADGGLVPHLSARLSRFVG
2A13 Chain:A ((14-166))
----------------------------------------------------------PPVHPFVAPLSYLLGTWRGQGEGEYPTIPSFRYGEEIRFSHSGKPVIAYTQKTWKLESGAPMHAESG-----YFRP-------RPDGSIEVVIAQSTGLVEVQKGTYNVDEQSIKLKSDLVGNASK---VKEISREFELV-DGKLSYVVRMSTT-TNPLQPHLKAILDKL--
General information:
TITO was launched using:
RESULT:
Template:
2A13.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41034 for 1040 contacts (-39.5/contact) +
2D Compatibility (PS) -15501 + (NN) -3181 + (LL) 3204
1D Compatibility (HY) -10400 + (ID) 2250
Total energy: -69162.0 ( -66.50 by residue)
QMean score : 0.367
(partial model without unconserved sides chains):
PDB file :
Tito_2A13.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2A13-query.scw
PDB file :
Tito_Scwrl_2A13.pdb
: