Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVAVLSGAGISAESGVPTFRDDKNGLWARFDPYELSSTQGWLRNPERVWGWYLWRHYLVANVEPNDGHRAIAAWQDH-----AEVSVITQNVDDLHERAGSGAVHHLHGSLFEFRCARCGV-------PYTDAL-------PEMPEPAIEVEP-PVCD---CGGLIRPDIVWFGEPLPEEPWRSAVEATGSADVMVVVGTSAIVYPAAGLPDLALARGTAVIEVNPEPTPLSGSATISIRESASQALPGLLERLPALLK
4G1C Chain:B ((18-266))
--IVIISGAGVSAESGVPTFRG-AGGYWRKWQAQDLATPLAFAHNPSRVWEFYHYRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSCGVVAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATNRFRFHFQGPCGTTLPEAL--------
General information:
TITO was launched using:
RESULT:
Template:
4G1C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129131 for 1838 contacts (-70.3/contact) +
2D Compatibility (PS) -24717 + (NN) -16226 + (LL) 1032
1D Compatibility (HY) -18800 + (ID) 4900
Total energy: -192742.0 ( -104.87 by residue)
QMean score : 0.506
(partial model without unconserved sides chains):
PDB file :
Tito_4G1C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4G1C-query.scw
PDB file :
Tito_Scwrl_4G1C.pdb
: