Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDISRWLERHVGVQLLRLHDAIYRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTYARDGDAYLIVASKGGDPRSPGWYHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYARLW-QIVNENNANRYTNYQSRTSRPIPVVVLTRR
3R5W Chain:E ((6-110))
--------------------------------------PVALLTTTGRKTGQPRVNPLYFLRDGGRVIVAASKGGAEKNPMWYLNLKANPKVQVQIKKEVLDLTAR--DATDEERAEYWPQLVTMYPS--YQDYQSWTDRTIPIVVC---
General information:
TITO was launched using:
RESULT:
Template:
3R5W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51361 for 758 contacts (-67.8/contact) +
2D Compatibility (PS) -11065 + (NN) -6437 + (LL) 2580
1D Compatibility (HY) -9200 + (ID) 2350
Total energy: -77833.0 ( -102.68 by residue)
QMean score : 0.666
(partial model without unconserved sides chains):
PDB file :
Tito_3R5W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R5W-query.scw
PDB file :
Tito_Scwrl_3R5W.pdb
: