Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDPT--IAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLVEAAYFINLAFMALFVFATPVK
4V1F Chain:B ((3-83))
LDPNALITAGALIGGGLIMGGGAIGAGIGDGIAGNALISGIARQPEAQGRLFTPFFITVGLVEAAYFINLAFMALFVFATP--
General information:
TITO was launched using:
RESULT:
Template:
4V1F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38779 for 447 contacts (-86.8/contact) +
2D Compatibility (PS) -7799 + (NN) 179 + (LL) 256
1D Compatibility (HY) -12400 + (ID) 3650
Total energy: -62193.0 ( -139.13 by residue)
QMean score : 0.100
(partial model without unconserved sides chains):
PDB file :
Tito_4V1F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4V1F-query.scw
PDB file :
Tito_Scwrl_4V1F.pdb
: