Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNVTVSIPTILRPHTGGQ-KSVSAS-GDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGLATAIADGDSVTILPAVAGG
2Q5W Chain:D ((1-77))
--MKVLYFAEIKDILQKAQEDIVLEQALTVQQFEDLLFERYPQIN------------NKKFQVAVNEEFVQK----SDFIQPNDTVALIPPVSGG
General information:
TITO was launched using:
RESULT:
Template:
2Q5W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46671 for 475 contacts (-98.3/contact) +
2D Compatibility (PS) -8248 + (NN) -1269 + (LL) 176
1D Compatibility (HY) -5600 + (ID) 800
Total energy: -62412.0 ( -131.39 by residue)
QMean score : 0.514
(partial model without unconserved sides chains):
PDB file :
Tito_2Q5W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Q5W-query.scw
PDB file :
Tito_Scwrl_2Q5W.pdb
: