Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPDLPSLDASGVRLAIVASSWHGKICDALLDGARKVAAGCGLDDPTVVRVLGAIEIPVVAQELARNHDAVVALGVVIRGQTPHFDYVCDAVTQGLTRVSLDSSTPIANGVLTTNTEEQALDRAGLPTSAEDKGAQATVAALATALTLRELRAHS
2VI5 Chain:E ((10-160))
---LPSLDASGVRLAIVASSWHGKICDALLDGARKVAAGCGLDDPTVVRVLGAIEIPVVAQELARNHDAVVALGVVIRGQTPHFDYVCDAVTQGLTRVSLDSSTPIANGVLTTNTEEQALDRAGLPTSAEDKGAQATVAALATALTLRELRAHS
General information:
TITO was launched using:
RESULT:
Template:
2VI5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122944 for 1269 contacts (-96.9/contact) +
2D Compatibility (PS) -17046 + (NN) -12668 + (LL) -8
1D Compatibility (HY) -18800 + (ID) 7550
Total energy: -179016.0 ( -141.07 by residue)
QMean score : 0.630
(partial model without unconserved sides chains):
PDB file :
Tito_2VI5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VI5-query.scw
PDB file :
Tito_Scwrl_2VI5.pdb
: