Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MYRYQVRVQQRRSEMNRWVATRSRRHTYQWITDHKSPRDHYRHISELRTSIATSSPGRCDMSPIPRIVSVSLAWAAAIGLMVPIGLAPPAMAAPCSGDAANAPPPPSAIVTDPGATALGPVRPGHGPIPTGRKPRGANDRAPLPKLGPLISALLNPGARNAAPLQQQALVPRANPGPNPAPNPPATGPQPPNATQLTPNPAPAPDPAPAAAPDPGATLAGATTSLAEWVTGPDSPNKTLERFGISGTDLGIPWDNGDPANRQVLMIFGDTFGYCAVDGHQWRYNTLFRSQDRDLGNGVHVTSGDASNRYSGSPVRQPGFSKQLINSIKWARDETGIIPTAGIAVGKTQYVNFMSIRNWGRDGEWTTNYSGIAVSKDNGQTWGVFPGTIRASGPDSGGKARFVPGNENFQMGAYLKSNDGYLYSFGTPPG------RGGSAYLARVPQRFVPDLTKYQYWNGDS-NSWVPNKPDAATPVIPGPVGE-MSVQYNTYLKQYLALYTNGM----NDVVARTAPAPQGPWSAEQMLVSSWQMPGGIYAPMMHPWSTGKDVYFNLSLWSAYNVMLMHTVLP |
| 1YIF Chain:A ((70-227)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGVWAPCLSYSDGKFWLIYTDVKVVD--GAWKDCHNYLVTCETINGDWSEPIK---L-------------NSSGFDASLFHD-TDGKKYLLNMLWDHRIDRHSFGGIVIQEYSDKEQ----K---LIGKPKVIFEGT---------DRKLTEAPHLYHIG--NYYYLLTAEGGTRYEHAATIARSANIEGPYEVH----------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YIF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -20136 for 1059 contacts (-19.0/contact) +
2D Compatibility (PS) -16044 + (NN) -12245 + (LL) 15436
1D Compatibility (HY) -2000 + (ID) 850
Total energy: -35839.0 ( -33.84 by residue)
QMean score : 0.368
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