Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTRPRTDAIHHHVVVNAPIERAFAVFTTR--FGDFKPREHNLLAIPITETVFECHAGGHIYDRGVDGSVCKWARVLVYEPPSRVLFTWDIGPTWRPETDLAKTSEVEVRFTAQSAETTRVDLEHRHLDRHGPGWESVADGVDSEAGWPLYLRRYTDLLCIQVQP
2M89 Chain:A ((1-133))
-----MVNINHRIGIKASPEKIYQALTTDDGLKKWWTN-D---------ISGAGVVGSTIKFRFNGG--GPDFKVTKLIPNKTVCWQHAGNMP-----ESWMGTEISFQLETVE-NQTFVRFTHSNWHETTD----FMAHC--NTKWAVFLLSLKDALEIGK--
General information:
TITO was launched using:
RESULT:
Template:
2M89.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54445 for 878 contacts (-62.0/contact) +
2D Compatibility (PS) -13881 + (NN) -2728 + (LL) 1780
1D Compatibility (HY) -4000 + (ID) 1100
Total energy: -74374.0 ( -84.71 by residue)
QMean score : 0.358
(partial model without unconserved sides chains):
PDB file :
Tito_2M89.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2M89-query.scw
PDB file :
Tito_Scwrl_2M89.pdb
: