Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTSPDPYAALPKLPSFSLTSTSITDGQPLATPQVSGIMGAGGADASPQLRWSGFPSETRSFAVTVYDPDAPTL----SGFWHWAVANLPANVTELPEGVGDGRELPGGALTLVNDAGMRRYVGAAPPPGHGVHRYYVAVHAVKVEKLDLPEDASPAYLGFNLFQHAIARAVIFGTYEQR
3N08 Chain:A ((2-152))
--------------NAMQLTSQAFSYGRPIPKKYS-C----QGVGISPPLSFSDVPREAKSLVLIVEDPDVPPSVREDGLWIHWIVYNLSPVVSNLAEGAQ------IFAVQGLNTAGEIGYCPPCPPDA--KHRYYFYAYALDV-VLSDEEGVTKEQLLEAMDGHIIATAELMGTYEK-
General information:
TITO was launched using:
RESULT:
Template:
3N08.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71286 for 1124 contacts (-63.4/contact) +
2D Compatibility (PS) -16127 + (NN) -15435 + (LL) 1008
1D Compatibility (HY) -8000 + (ID) 2550
Total energy: -112390.0 ( -99.99 by residue)
QMean score : 0.468
(partial model without unconserved sides chains):
PDB file :
Tito_3N08.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3N08-query.scw
PDB file :
Tito_Scwrl_3N08.pdb
: