Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPGRAPGSTLARVGSIPAGDDVLDPDEPTYDLPRVAELLGVPVSKVAQQLRE--GHLVAVRRAGGVVIPQVFFTNSGQVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAVSNARPVDALHAHQAREVVRRAQAMAY
1Y6U Chain:A ((8-59))
-----------------------IWERYTLTIEEASKYFRIGENKLRRLAEENKNANWLIMNGNRIQIKRKQFEK-------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1Y6U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28300 for 303 contacts (-93.4/contact) +
2D Compatibility (PS) -5419 + (NN) -1486 + (LL) 5280
1D Compatibility (HY) -1600 + (ID) 250
Total energy: -31775.0 ( -104.87 by residue)
QMean score : 0.489
(partial model without unconserved sides chains):
PDB file :
Tito_1Y6U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y6U-query.scw
PDB file :
Tito_Scwrl_1Y6U.pdb
: