Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLSLTLSEASCIASASRWRHIIPAGVVCALIAGIGVGCHGGPSDVVGRAGPDRAHTSITLVAYAVPEPGWSAVIPAFN----ASEQGRGVQVITSYGASADQSRGVADGKPADLVNFSVEPDIARLVKAGKVDKDWDAD-ATKGIPFGSVVTFVVRAGNPKNIRDWDDLLRPGIEVITPSPLSSGSAKWNLLAPYAAKSDGG--RNNQAGIDFVNTLVNEHVKLRPG-SGREATDVFVQGSGDVLISYENEAIATER-AG-KPVQHVTPPQ-TFKIENPLAV---VATSTHLGAATAFRNFQYTVQAQKLWAQAGFRPVDPAVAADFADLFPVPAKLWTIAD-LGGWGSVDPQLFDKATGSITKIYLRATG |
1SBP Chain:A ((3-307)) | -------------------------------------------------------IQLLNVSYDPTRELYEQYNKAFSAHWKQE-TGDNVVIDQSHGGSGKQATSVINGIEADTVTLALAYDVNAIAERGRIDKNWIKRLPDDSAPYTSTIVFLVRKGNPKQIHDWNDLIKPGVSVITPNPKSSGGARWNYLAAWGYA-LHHNNNDQAKAEDFVKAL-FKNVEVLDSGARGSTNTFVERGIGDVLIAWENEALLATNELGKDKFEIVTPSESILAEPTVSVVDKVVEKKDTKAVAEAYLKYLYSPEGQEIAAKNFYRPRDADVAKKYDDAFPK-LKLFTIDEVFGGWAKAQKDHFADG-GTFDQI------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1SBP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -71539 for 2531 contacts (-28.3/contact) +
2D Compatibility (PS) -31508 + (NN) -7456 + (LL) 3512
1D Compatibility (HY) -17200 + (ID) 4650
Total energy: -128841.0 ( -50.91 by residue)
QMean score : 0.381
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